Giotto Documentation

Brief introduction

Giotto contains two independent yet fully integrated parts. The first part (Giotto Analyzer) is a R package that provides utilities and step-by-step instructions about the different steps in analyzing spatial single-cell data. The second part (Giotto Viewer), which is a web-based server, provides a fast and interactive viewer of spatial single-cell data and additional annotations (such as stainings, morphology and subcellular transcript localization information). These two parts can be used either independently or iteratively.

To get help on Giotto Analyzer

Giotto Analyzer introduction, and learn by browsing tutorials
Browse the Analyzer usage manual (R)
Get details from Github repository

To get help on Giotto Viewer

Giotto Viewer & a live demo
Learn how to setup Giotto Viewer for a dataset
Browse the viewer usage manual