Brief introductionGiotto contains two independent yet fully integrated parts. The first part (Giotto Analyzer) is a R package that provides utilities and step-by-step instructions about the different steps in analyzing spatial single-cell data. The second part (Giotto Viewer), which is a web-based server, provides a fast and interactive viewer of spatial single-cell data and additional annotations (such as stainings, morphology and subcellular transcript localization information). These two parts can be used either independently or iteratively.
Giotto Analyzer tutorials
Giotto Viewer tutorials
|Tutorial 1 Launch a docker terminal (docker users)|
|Tutorial 2 Set up a dataset for viewing (3 modes: no images, with images, or with images and segmentations)|
|More info including a live demo|
|Browse the viewer usage manual|