As a way to quickly allow users use Giotto and to simplify the install process, we provide a premade docker image containing both the latest version of the analyzer and the viewer.
See Docker details here
Installing modules separately
The two modules of Giotto,
, can be installed separately.
is an R package named
. It consists of basic functionalities of spatial toolkit including data structures and methods to store data matrices, construct spatial grid and network, and others. Giotto analyzer is maintained separately at our Github page
To install just the analyzer, run the command within R:
is a set of two Python packages (in pip repository):
. It requires opencv-python, scikit-image as pre-requisites. Also requires ImageMagick commonly available in Linux, and Ruby, tileup Ruby package. See